Zaslaver's Lab Multi-Animal Tracker
The Multi-Animal Tracker is a machine-learnign based software that anables tracking any moving organism.
It offers a high-throughput (e.g., ~100 worms at a time) and accurate tracking, as well as an easy end-to-end solution for acquiring movies, tracking individual animals and built-in analyses functions.
We also implemented a user-friendly GUI so no special programming skills are required to opertae the software.
​
The paper related to the software is: A multi-animal tracker for studying complex behaviors, Itskovits et al. BMC Biology 2017.
​
To download the software click here (github repository).
​
This download includes a detailed step-by-step user manual together with exemplary movies to analyze.
​
----------------------------------------------------------------------
​Homogeneous Sets Finder
​
Homogeneous set structures are interesting networks structures, a generalization network motifs. For more information about homogeneous sets visit:
​
Azulay A, Itskovits E, Zaslaver A (2016) The C. elegans Connectome Consists of Homogenous Circuits with Defined Functional Roles. PLoS Comput Biol 12(9): e1005021. doi:10.1371/journal.pcbi.1005021
​
We provide a generic pipeline that extracts homogeneous sets from any given network using its adjacency matrix as an input.
​
The code is available through github.
​​​​​
​